Coreform-Cubit-2022.6 error on ubuntu 21.10

Coreform Cubit
#1

Coreform Cubit Version: 2022.6
Platform: Ubuntu 21.10

Issue
When running ./coreform_cubit I have this error:

[2022-07-19 12:46:39.583] [app_logger] [info] Using gui
[2022-07-19 12:46:39.913] [app_logger] [trace] rlm_dir: /opt/Coreform-Cubit-2022.6/bin/licenses:/home/hbui/.config/Coreform/licenses
[2022-07-19 12:46:39.913] [app_logger] [debug] /opt/Coreform-Cubit-2022.6/bin/licenses:/home/hbui/.config/Coreform/licenses
[2022-07-19 12:46:39.920] [app_logger] [debug] RLM initialized
[2022-07-19 12:46:39.920] [app_logger] [info] RLM session initialized
[2022-07-19 12:46:41.922] [app_logger] [error] No logins were valid: -1
[2022-07-19 12:46:43.122] [app_logger] [error] dlopen error: /opt/Coreform-Cubit-2022.6/bin/libcfplugincomp.ccl /opt/Coreform-Cubit-2022.6/bin/./././libmpi.so.40: undefined symbol: opal_delay_abort
[2022-07-19 12:46:43.122] [app_logger] [error] Error loading component libcfplugincomp.ccl:
Error loading component:
libcfplugincomp.ccl

[2022-07-19 12:46:43.407] [app_logger] [error] dlopen error: /opt/Coreform-Cubit-2022.6/bin/libcfplugingui.ccg /opt/Coreform-Cubit-2022.6/bin/././libmpi.so.40: undefined symbol: opal_delay_abort
[2022-07-19 12:46:43.407] [app_logger] [error] Error loading component libcfplugingui.ccg:
Error loading component:
libcfplugingui.ccg

[2022-07-19 12:46:43.918] [app_logger] [error] dlopen error: /opt/Coreform-Cubit-2022.6/bin/libcoreformcae.ccg /opt/Coreform-Cubit-2022.6/bin/././libmpi.so.40: undefined symbol: opal_delay_abort
[2022-07-19 12:46:43.918] [app_logger] [error] Error loading component libcoreformcae.ccg:
Error loading component:
libcoreformcae.ccg

[2022-07-19 12:46:44.253] [app_logger] [error] dlopen error: /opt/Coreform-Cubit-2022.6/bin/libcubitcomp.ccl /opt/Coreform-Cubit-2022.6/bin/././libmpi.so.40: undefined symbol: opal_delay_abort
[2022-07-19 12:46:44.253] [app_logger] [error] Error loading component libcubitcomp.ccl:
Error loading component:
libcubitcomp.ccl

[2022-07-19 12:46:44.588] [app_logger] [error] dlopen error: /opt/Coreform-Cubit-2022.6/bin/libcubitcompgui.ccg /opt/Coreform-Cubit-2022.6/bin/././libmpi.so.40: undefined symbol: opal_delay_abort
[2022-07-19 12:46:44.588] [app_logger] [error] Error loading component libcubitcompgui.ccg:
Error loading component:
libcubitcompgui.ccg

This error does not happen with 2021.11 on the same machine.

#2

From the error it looks like we’re loading conflicting MPI libraries from multiple locations. Do you have anything in your LD_LIBRARY_PATH environment variable?
You can take a system call log like this:

strace -o debug_cubit.txt /opt/Coreform-Cubit-2022.6/bin/coreform_cubit

Please attach the generated debug_cubit.txt file.

#3

Yes, my system has a separated compiled mpi defined in LD_LIBRARY_PATH. Below is the debug file:

debug_cubit.txt (6.0 MB)

#4

We ship OpenMPI 4.1.3 with Cubit 2022.6. Your version of MPI must match the version we ship with 2021.11 otherwise 2021.11 wouldn’t work either. Try running coreform_cubit like this:

LD_LIBRARY_PATH="" ./coreform_cubit